rs26986748 SNP Detail

Summary

• ID
  rs26986748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86797789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCTAGC TTTTGCATTA
  TTAACTCTCT TTGCTCATGT CATCGACCAC CCAGTCTTAC CGATCGGATC TCCATTCTTG
  AACTCATCCT GTTGTTTCTT TTTCAGTTCA GTTGTTGAAG ACCTTATCAT CTGCCCTCTG
  GGTTGGTGAG ATAGCATTCC GCATGACTTA ACACCCACAT AACCTTTTCA GGTCCCTCTT
  Y
  TGGCACACCC CAGAGCCTTG CTTACCAAAC TACTTACCAC AACCTTGGCA CACAAATTAG
  CTCCTCTTTC AGGGGCTTTC CACTTTCCCT GCAAATTCAG CTCTAGAACC TTCTTCCAGG
  TCACTTTCTT TATGAAGACT TCACCTCTGA GCTCTCCGGG CGTGTCTGTG TTAGAGCACC
  TGTCGTGCTC TAGGCATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37229468	NES08588522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	C	C		T
ss323772448	CHEV_11_86720465	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26986748					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229468	NES08588522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86797789 () rs orientation: forward

Symbol	Name	Function Class
D11Mit282	DNA segment, Chr 11, Massachusetts Institute of Technology 282	1624 bp distal
Rr237379	regulatory region 237379	389 bp distal
Rr242217	regulatory region 242217	1189 bp distal
Rr252218	regulatory region 252218	12 bp proximal