rs26986753 SNP Detail

Summary

• ID
  rs26986753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86795917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGATGA GATGGCGCCT
  GTTGTCCCTG GCATTCTCTA GGCCGTTTCA GATGCTCAAA CAATGTTGAA AGGATGAGCA
  TATGCAAGGA GTCCGGGTGC TGTGTGACAT TTGAAGACTG CTTAGTTCTT AGAACACTGT
  GAAGATGGCC TCAGAATGAC TTTTCTAAAT GTCAAACAAA TTACATCAAT TTCTGTGTTC
  Y
  AGCAACTTCT ACTGAGTGCT CCAATTCCAA CAAACTACAT TTGCACAGCA TCCACACTCG
  ATAGTATTTA ATATGTGTGT CCTCCTGAAG ACTAAACTAC ACAGGGTGGT GGTACCAGGC
  TTTTAATAGA ATTTGACGAG TGACGCGCGC GCGCGCACAC ACACACACAC ACACACACAC
  ACACACCTTC TTTAAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37229473	NES08588584	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	C	C		T
ss323772442	CHEV_11_86718593	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26986753					SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229473	NES08588584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86795917 () rs orientation: forward

Symbol	Name	Function Class
D11Mit282	DNA segment, Chr 11, Massachusetts Institute of Technology 282	123 bp proximal
Gm73854	predicted gene, 73854	1590 bp downstream
Rr237379	regulatory region 237379	884 bp proximal
Rr242217	regulatory region 242217	within coordinates
Rr252218	regulatory region 252218	1884 bp proximal