rs26986754 SNP Detail

Summary

• ID
  rs26986754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86795647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAACCCAC TGCAGGTCTC
  TGGAATTCCC AGCTGCCTTG AACTTGCTAT GTAGTGGGCA ACCTTGAACT CCTGATCCTT
  CTGACAATGC CTCCCAAGTG CTGAGATTAT AGGCAGGCAT CACCCAGCCC TGCCTCATCT
  GGAAAGATTT CTAATCATGC TAGCATGGTT TCCTGCTTCT GCACTGGGCC ATCTGTCCTC
  Y
  ATCTTCAGCT GGAGGCCGTG CTTACCTCAT TGACAGCCCC TGTTTAGATC TGCTGGACAA
  TGAGCTCCTT GAGAGATGAG ATGGCGCCTG TTGTCCCTGG CATTCTCTAG GCCGTTTCAG
  ATGCTCAAAC AATGTTGAAA GGATGAGCAT ATGCAAGGAG TCCGGGTGCT GTGTGACATT
  TGAAGACTGC TTAGTTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229474	NES08588582	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26986754					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229474	NES08588582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86795647 () rs orientation: forward

Symbol	Name	Function Class
D11Mit282	DNA segment, Chr 11, Massachusetts Institute of Technology 282	393 bp proximal
Gm73854	predicted gene, 73854	1320 bp downstream
Rr237379	regulatory region 237379	1154 bp proximal
Rr242217	regulatory region 242217	within coordinates