rs26986995 SNP Detail

Summary

• ID
  rs26986995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAACACCA ACTGTCACTT
  ATCCTCTGGA AATCCTCCTG GGCACTGGGC AACAGGCTTC TCTGACGGGA TTGCATATGG
  CGTCTGAATT CCGGTGAGGA AGGAGCCTAG GTCTTCTGTT ACTCTCCCAA TCCCAATGTC
  TACCACATTC TTCTACCACA GGAGCCGGCT TCTGGGAGTG TGCCTAACCA CCCTTTCCTA
  R
  TAACCTTTCG AGCTGAAGAC AGTCTCCTCA GCGTCATACT TTGAGAGGCA GGCTGTGCAT
  GTACGAGATT TGCTCCCGCT GTCTGAACCA CAAGCCTGGC AAACGAGACC CACACCATCC
  TTCCCTGGTG TGCCCTAGTT TTTCCTCATC TCTATTTCTT GTCTTCTCAC AGCACCAGGC
  CACTAAGAGT GCCTTGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37194335	NES08425421	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26986995					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194335	NES08425421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699615 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2968	CpG island 2968			747 bp proximal
Flcn	folliculin			Intron
				Noncoding-Transcript-Variant
Gm16062	predicted gene 16062			1291 bp upstream
Rr448261	regulatory region 448261			405 bp distal
Rr448262	regulatory region 448262			within coordinates
Rr448263	regulatory region 448263			789 bp proximal
Rr448264	regulatory region 448264			1073 bp proximal
Rr448265	regulatory region 448265			1217 bp proximal
Tssr101863	transcription start site region 101863			1318 bp upstream
Tssr101864	transcription start site region 101864			1498 bp upstream
Tssr101865	transcription start site region 101865			1520 bp upstream
Tssr108246	transcription start site region 108246			985 bp downstream
Tssr108247	transcription start site region 108247			1237 bp downstream