rs26986996 SNP Detail

Summary

• ID
  rs26986996
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC AACAAGAGTT TCGAATCTTC
  W
  GGTTACTCAT TCCTCAGCCC AGGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37194336	NES08425420	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	A		T	T		A	A
ss132241344	ENSMUSSNP933902	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				T
ss323699335	CHEV_11_59621975	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs26986996					SNP	T	T	A	T	T	A	T	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194336	NES08425420	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	1063 bp proximal
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	1607 bp upstream
Rr448261	regulatory region 448261	89 bp distal
Rr448262	regulatory region 448262	51 bp proximal
Rr448263	regulatory region 448263	1105 bp proximal
Rr448264	regulatory region 448264	1389 bp proximal
Rr448265	regulatory region 448265	1533 bp proximal
Tssr101863	transcription start site region 101863	1634 bp upstream
Tssr101864	transcription start site region 101864	1814 bp upstream
Tssr101865	transcription start site region 101865	1836 bp upstream
Tssr108246	transcription start site region 108246	1301 bp downstream
Tssr108247	transcription start site region 108247	1553 bp downstream