rs26986997 SNP Detail

Summary

• ID
  rs26986997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59698678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAAGAG AGTCAGGACC
  CAGGGCAGAA GCACGCATCC TGGAAACGGG GCCACGTCCT TCTTAGAGGG GCATGCAAGG
  AGGAGAAATA AGCACCCTTC AGCAAAGCAT GCACGTGCAC GGCCCAAGTA CGGAGTGTCA
  GTACCAACCT TATGCTTAGC ACATCACAAC TGCACCATCC CGCCTAGAGC AGAACATGTA
  Y
  GAGGCCCGCC GGAAGAGTCA GGTAAGCAAG CTGCACTATT CGAATTCAAA GACTTGAGGT
  TGTCTAGAGA AAGAGAAAAC AAGAAAACAA AAAATCAGAC CAAATTCTGA GAGCTAAAGC
  TCTTGCAGCG TGAGTCGGAG CAGCTAACAG TCAAATCAGG GACTGTCAGG AGGAGCTGGA
  GATTTGTATT TGTTGTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37194337	NES08425447	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26986997					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194337	NES08425447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59698678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	1684 bp proximal
Flcn	folliculin	within coordinates
Rr448261	regulatory region 448261	511 bp proximal
Rr448262	regulatory region 448262	672 bp proximal
Rr448263	regulatory region 448263	1726 bp proximal
Tssr108246	transcription start site region 108246	1922 bp downstream