rs26988786 SNP Detail

Summary

• ID
  rs26988786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54751507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCTGACTC CGCCTCTGAG GGCGCCCCCT CTTGGCAACC
  AATCAGGGCC GGGGCACAGC TGGCGACGCT CCGCATAGCA ACCAATCAGA ATGCAACATG
  Y
  CCTTCCTAGC CCGCCTTCCC CGCAGGAGGA AGTTCAGGCG TTTGCTAAGC AGAGCTAAGT
  ATAAAAACGC GAGAAGCCGC GGTGCCAAAT TACGGACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37206314	NES08427306	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T	T	T	T	C	T	T
ss132140152	ENSMUSSNP1483369	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26988786					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206314	NES08427306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54751507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	within coordinates
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	106 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Tssr3501	transcription start site region 3501	86 bp upstream
Tssr101539	transcription start site region 101539	109 bp upstream
Tssr101540	transcription start site region 101540	334 bp upstream
Tssr108005	transcription start site region 108005	78 bp upstream