rs26988794 SNP Detail

Summary

• ID
  rs26988794
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:54750893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACAAGTC TGAGGCCAGC
  CCCTCCTAAT TCTTAATCAA ACTTCAGGTG TCTGCCTATA AGTCCCCGTG ATTCTTAAAT
  TTCGAGACAA GATCTATGTT GCCTGGGCTT GCCATCAACA AGTAGGCTCA GCAATGCTGC
  CTCTCGCCCA CTAGAGATTT CTGTATTCCT CTAGGTAAGT TAAATCCTAT TTATAGGTTC
  W
  CAAAACATGC TGTTTATTAA TTTGAAGCAC TTCTTACGAT TTTATTAGTT GTTTATAGTC
  TTCCTACTAT GGAACTTCTT TATTAAGGCA TAGGTGGTCG GTTTATGGTC ATCAGTCTCC
  TCTATTCACT ACCTTTCATG GATCAGCCAT CCTCCTCATT CATTGTCTCG TGTGGCTGTC
  ACCCTCCTCC GCTCCGCGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37206322	NES08427298	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26988794					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206322	NES08427298	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54750893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2891	CpG island 2891			420 bp proximal
Gm31490	predicted gene, 31490			within coordinates
Gm57377	predicted gene, 57377			720 bp upstream
Lyrm7	LYR motif containing 7			Intron
				Noncoding-Transcript-Variant
Rr386093	regulatory region 386093			within coordinates
Rr447402	regulatory region 447402			1359 bp distal
Rr447403	regulatory region 447403			543 bp distal
Rr447404	regulatory region 447404			230 bp proximal
Rr447405	regulatory region 447405			532 bp proximal
Rr447406	regulatory region 447406			731 bp proximal
Rr447407	regulatory region 447407			835 bp proximal
Rr447408	regulatory region 447408			1037 bp proximal
Tssr3501	transcription start site region 3501			700 bp upstream
Tssr101539	transcription start site region 101539			723 bp upstream
Tssr101540	transcription start site region 101540			948 bp upstream
Tssr108005	transcription start site region 108005			497 bp downstream