rs26988796 SNP Detail

Summary

• ID
  rs26988796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54750813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCCTAAT TCTTAATCAA ACTTCAGGTG TCTGCCTATA
  AGTCCCCGTG ATTCTTAAAT TTCGAGACAA GATCTATGTT GCCTGGGCTT GCCATCAACA
  R
  GTAGGCTCAG CAATGCTGCC TCTCGCCCAC TAGAGATTTC TGTATTCCTC TAGGTAAGTT
  AAATCCTATT TATAGGTTCA CAAAACATGC TGTTTATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37206324	NES08427296	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A	A	A	A	A	A	A
ss38798912	mCV24258208	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss132140124	ENSMUSSNP6365129	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26988796					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206324	NES08427296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54750813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	500 bp proximal
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	800 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Tssr3501	transcription start site region 3501	780 bp upstream
Tssr101539	transcription start site region 101539	803 bp upstream
Tssr101540	transcription start site region 101540	1028 bp upstream
Tssr108005	transcription start site region 108005	577 bp downstream