rs26988797 SNP Detail

Summary

• ID
  rs26988797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54750800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAACGC AAAAAGTAGC
  TGGGCGTAGT GGCTCGGGAG TCAGATTCCC AGCACTTAGC ATGAAGATTG CTGAGAATTG
  GCCGCCGGTG TGAGCTACAA GTCTGAGGCC AGCCCCTCCT AATTCTTAAT CAAACTTCAG
  GTGTCTGCCT ATAAGTCCCC GTGATTCTTA AATTTCGAGA CAAGATCTAT GTTGCCTGGG
  Y
  TTGCCATCAA CAAGTAGGCT CAGCAATGCT GCCTCTCGCC CACTAGAGAT TTCTGTATTC
  CTCTAGGTAA GTTAAATCCT ATTTATAGGT TCACAAAACA TGCTGTTTAT TAATTTGAAG
  CACTTCTTAC GATTTTATTA GTTGTTTATA GTCTTCCTAC TATGGAACTT CTTTATTAAG
  GCATAGGTGG TCGGTTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37206325	NES08427295	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26988797					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206325	NES08427295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54750800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	513 bp proximal
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	813 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Rr447402	regulatory region 447402	1266 bp distal
Rr447403	regulatory region 447403	450 bp distal
Rr447404	regulatory region 447404	323 bp proximal
Rr447405	regulatory region 447405	625 bp proximal
Rr447406	regulatory region 447406	824 bp proximal
Rr447407	regulatory region 447407	928 bp proximal
Rr447408	regulatory region 447408	1130 bp proximal
Tssr3501	transcription start site region 3501	793 bp upstream
Tssr101539	transcription start site region 101539	816 bp upstream
Tssr101540	transcription start site region 101540	1041 bp upstream
Tssr108005	transcription start site region 108005	590 bp downstream