rs26988800 SNP Detail

Summary

• ID
  rs26988800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54750517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAAGGA ATCTGACACC
  CTCTTCTGGC CTCTGTGAGT ACCAGACATG CACATGGTGC ACAGACATAC ATGCCTTGCA
  AATAAAATAG TTGAAAAAGT TATTTTAAAA GAAAATGTGA TCTTCATTAC CACAAATCTA
  CTAGAACCGG CATTACATTG TAGCTAATCA TATCTTTTTA CTTATTATTT ATGCACTGTT
  R
  GGCATGGAAG CCAATGCCTT GAAAATGCTA AGGGCTCCAA CTTAAAAGTT AAATACAACC
  TCAGCCCTAC TAAGAAACTT CTTTTCAAAC GCAAAAAGTA GCTGGGCGTA GTGGCTCGGG
  AGTCAGATTC CCAGCACTTA GCATGAAGAT TGCTGAGAAT TGGCCGCCGG TGTGAGCTAC
  AAGTCTGAGG CCAGCCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37206328	NES08427329	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26988800					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206328	NES08427329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54750517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	796 bp proximal
Gm31490	predicted gene, 31490	123 bp upstream
Gm57377	predicted gene, 57377	1096 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Rr447402	regulatory region 447402	983 bp distal
Rr447403	regulatory region 447403	167 bp distal
Rr447404	regulatory region 447404	606 bp proximal
Rr447405	regulatory region 447405	908 bp proximal
Rr447406	regulatory region 447406	1107 bp proximal
Rr447407	regulatory region 447407	1211 bp proximal
Rr447408	regulatory region 447408	1413 bp proximal
Tssr3501	transcription start site region 3501	1076 bp upstream
Tssr101539	transcription start site region 101539	1099 bp upstream
Tssr101540	transcription start site region 101540	1324 bp upstream
Tssr108005	transcription start site region 108005	873 bp downstream