TGTGG AACACTAAAG GATAGTAATC R GAGTAATTTT ATATAGTACT TCCTG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37206330 | NES08427338 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs26988802 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37206330 | NES08427338 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr11:54750114 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2891 | CpG island 2891 | 1199 bp proximal | ||||||
Gm31490 | predicted gene, 31490 | 526 bp upstream | ||||||
Gm57377 | predicted gene, 57377 | 1499 bp upstream | ||||||
Lyrm7 | LYR motif containing 7 | within coordinates | ||||||
Rr386093 | regulatory region 386093 | within coordinates | ||||||
Tssr3501 | transcription start site region 3501 | 1479 bp upstream | ||||||
Tssr101539 | transcription start site region 101539 | 1502 bp upstream | ||||||
Tssr101540 | transcription start site region 101540 | 1727 bp upstream | ||||||
Tssr108005 | transcription start site region 108005 | 1276 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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