rs26991195 SNP Detail

Summary

• ID
  rs26991195
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58278249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTTGTA GATCAGGCTG
  GCCTTGAACT CAGAAATCTG CCTGCCTCTG TGACTTTTGT TTTTAATACC TATATATACT
  TTTCTTCTAC ATCTTGAGAG GTGTTGACTT GGAACAGCTA GGGCCATCTA GTTATTTCTC
  TTCTTCTACA AAAGTAACCT GAGAATGGCC ATCATTTTGC CAGCGTACCC AGGCAACTTG
  W
  TGGCAGCTTG CAGTGCGTGT TTGTTTCTTG CTAAAGGAAC AGTTCTGCGA CCACTGCTGC
  CCTGTAGCTC TGGTCTTATT TTCCTAGAAG AGTTTCTAGT GGAGCGCTGC TGATCTTTTG
  TGATGGTGGG CGGAGAGGAG GACAGGAGGG CAAGGGTGGG GCCGTCTCAG GAGTCAGGGC
  CAGAAGTGAA TGTGTAATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37197328	NES08426207	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26991195					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197328	NES08426207	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58278249 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	662 bp downstream
Tssr101740	transcription start site region 101740	617 bp downstream
Tssr101741	transcription start site region 101741	599 bp downstream
Tssr108157	transcription start site region 108157	619 bp upstream
Tssr108158	transcription start site region 108158	587 bp upstream