rs26991196 SNP Detail

Summary

• ID
  rs26991196
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58277709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA CTGGAGCTTC AGCTACTTAA
  M
  TGGGCTCAAA TTGAAACGAG ATTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37197329	NES08426234	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		A	C	C	C		C	C	C	C		C
ss38711174	mCV25372088	ABI	CRAMUS_MOUSE	f	SNP	C	C					A		C
ss132196829	ENSMUSSNP3988476	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss323690058	CHEV_11_58200385	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26991196					SNP	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197329	NES08426234	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58277709 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	122 bp downstream
Tssr101740	transcription start site region 101740	77 bp downstream
Tssr101741	transcription start site region 101741	59 bp downstream
Tssr108157	transcription start site region 108157	79 bp upstream
Tssr108158	transcription start site region 108158	47 bp upstream