rs26991197 SNP Detail

Summary

• ID
  rs26991197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58275794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC AGGTCAAACA CCCTGCTTTC
  Y
  CTTCGGTGAA GACAGGGATT TCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37197330	NES08426265	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C		C	C
ss323690037	CHEV_11_58198470	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs26991197					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197330	NES08426265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58275794 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	348 bp downstream
Tssr101736	transcription start site region 101736	280 bp downstream
Tssr101737	transcription start site region 101737	240 bp downstream
Tssr101738	transcription start site region 101738	222 bp downstream
Tssr101739	transcription start site region 101739	1755 bp upstream
Tssr101740	transcription start site region 101740	1819 bp upstream
Tssr101741	transcription start site region 101741	1847 bp upstream
Tssr108157	transcription start site region 108157	1802 bp downstream
Tssr108158	transcription start site region 108158	1854 bp downstream