rs26999471 SNP Detail

Summary

• ID
  rs26999471
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118310794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGACATA CACTAACTAA
  CGTTAGAATA TATACTAAAT TACATGTGAA AAATAGAAAT GTGCTGGGTT CCCTCTTCTG
  TGCTTGGGTT GGCAGGCCAT CTTTCTTGAA TTCTCTGATG TTCGTGTCAG ACCAAACCAA
  GTCCCAATCA GCCACCTTCT ATTTGTTACA GCTTCTCCAC TCGGAATAGC AGATTGCTCG
  W
  AGGATTTTTA AAGCACTCTA GGTATTCCTT CCAATTCCCA GCTCCTCTCC TTACACCTGC
  AACGGGAGGC ATGGTCCCGA ATACTGTGCT CATCTTTCTC AAGCCTTCCT TTGCAGACAA
  CACATAGCTG TGCAACTCTA AATAATACAT TGCTCAGTTC TGCCCAGCTT AACCTTTATG
  AGAGATGGCA GAGTCGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss37242591	NES08509557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs26999471					SNP	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37242591	NES08509557	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118310794 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	882 bp upstream
Cpgi4233	CpG island 4233	493 bp distal
Gm72450	predicted gene, 72450	94 bp downstream
Rr403174	regulatory region 403174	792 bp downstream
Rr461045	regulatory region 461045	956 bp distal
Rr461046	regulatory region 461046	871 bp distal
Rr461047	regulatory region 461047	200 bp distal
Tssr106139	transcription start site region 106139	717 bp downstream
Tssr112169	transcription start site region 112169	953 bp upstream
Tssr112170	transcription start site region 112170	922 bp upstream
Tssr112171	transcription start site region 112171	837 bp upstream