rs26999472 SNP Detail

Summary

• ID
  rs26999472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118309928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGGCCGC GGGCGCACCG
  TCACTCACCC ACTGAGGGCC TGGCTCCGGA GCCTGCGGGC TGCCGCCTAC CTGCGTAGGG
  CCGGACAGGG CAGGCGGCCA CTTCCGCCCC GCCGCGCGCT CCCGGCAGTC TCTGTTCTGC
  GCCTGCGCCT CACTCTGGCC GCGCGCTCCC GGCAGCCTCT GCTCTAAGTG TCTTCCTGCG
  Y
  CGCACTCTCG GTTGCCTACA GCCACGTCTT CCCGGCAGCC TTTGCTCTAT GTGTCTTCCT
  CTACTCGCCC ACCCAGTCTC TGCTCTGCGC CTGCGCACTG AGCGCCGGGC TGCTGGGAAT
  CGTAGTTTTT CGCTTGAGCT TGTAATTGAG GCGCGGAAAT CCAGCAAAGG AGTTGTCTGT
  CGTTCCCCAG TTAAGCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss37242592	NES08509556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs26999472					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37242592	NES08509556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118309928 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	16 bp upstream
Cpgi4233	CpG island 4233	within coordinates
Gm72450	predicted gene, 72450	within coordinates
Rr403174	regulatory region 403174	within coordinates
Rr461045	regulatory region 461045	90 bp distal
Rr461046	regulatory region 461046	5 bp distal
Rr461047	regulatory region 461047	within coordinates
Tssr106139	transcription start site region 106139	121 bp upstream
Tssr112169	transcription start site region 112169	87 bp upstream
Tssr112170	transcription start site region 112170	56 bp upstream
Tssr112171	transcription start site region 112171	14 bp downstream