rs26999473 SNP Detail

Summary

• ID
  rs26999473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118309886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCGGGTG GCAACAGGCC
  CCAGAACACA GCGAGGGAGG GCACCCGGCC GCGGGCGCAC CGTCACTCAC CCACTGAGGG
  CCTGGCTCCG GAGCCTGCGG GCTGCCGCCT ACCTGCGTAG GGCCGGACAG GGCAGGCGGC
  CACTTCCGCC CCGCCGCGCG CTCCCGGCAG TCTCTGTTCT GCGCCTGCGC CTCACTCTGG
  Y
  CGCGCGCTCC CGGCAGCCTC TGCTCTAAGT GTCTTCCTGC GCCGCACTCT CGGTTGCCTA
  CAGCCACGTC TTCCCGGCAG CCTTTGCTCT ATGTGTCTTC CTCTACTCGC CCACCCAGTC
  TCTGCTCTGC GCCTGCGCAC TGAGCGCCGG GCTGCTGGGA ATCGTAGTTT TTCGCTTGAG
  CTTGTAATTG AGGCGCGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss37242593	NES08509553	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs26999473					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37242593	NES08509553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118309886 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	within coordinates
Gm72450	predicted gene, 72450	27 bp upstream
Rr403174	regulatory region 403174	within coordinates
Rr461045	regulatory region 461045	48 bp distal
Rr461046	regulatory region 461046	within coordinates
Rr461047	regulatory region 461047	38 bp proximal
Tssr106139	transcription start site region 106139	163 bp upstream
Tssr112169	transcription start site region 112169	45 bp upstream
Tssr112170	transcription start site region 112170	14 bp upstream
Tssr112171	transcription start site region 112171	56 bp downstream