rs26999474 SNP Detail

Summary

• ID
  rs26999474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118309208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACACCG TGAGACCAGG
  TTCCCAGGTC TAAGCTTTGT CCAGTATATA GACCTGAGAT GGAACTGGGA AATGAAGCTG
  GTTACTGAGG CACTCCCGAG TGACTGCAGA AAGGTGCTTG GGTTTACTGG AGGCGTATGA
  ATGTCACAGG TGCTAGGGGC AGGAAGCTCT GTAAGGATGG ACCAGGTGAT GCCCGACTTC
  R
  AGGCTGGGAG AGTCTAGCCG AGATTAGGGT TGTATGTGCA GAAAGGGACT AGGGGGTGTG
  CAGAAGAAGC AGGGGGTGTC GGTAGTCGGG TAGTAAAAAA GGATAGTGCA CTATGCTGCC
  TAGGGGGAAG GTCCAATCTT AGATGACAGC AAGAAGAGCC AGGACAGGAG CAAGGAAGTG
  GGCGGTTACA GGTGAGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss37242594	NES08509552	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs26999474					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37242594	NES08509552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118309208 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	179 bp proximal
Gm72450	predicted gene, 72450	705 bp upstream
Rr403174	regulatory region 403174	493 bp upstream
Rr461045	regulatory region 461045	within coordinates
Rr461046	regulatory region 461046	631 bp proximal
Rr461047	regulatory region 461047	716 bp proximal
Tssr106139	transcription start site region 106139	841 bp upstream
Tssr112169	transcription start site region 112169	574 bp downstream
Tssr112170	transcription start site region 112170	636 bp downstream
Tssr112171	transcription start site region 112171	734 bp downstream