rs26999976 SNP Detail

Summary

• ID
  rs26999976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119160339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGA GAAAGTCACA GGAATTGTGG
  R
  TAAACACTGC CAACCAGAAG CACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37240499	NES08516721	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A	G	A	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26999976					SNP	G	G	G	A	A	A	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37240499	NES08516721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119160339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4265	CpG island 4265	865 bp distal
Gaa	glucosidase, alpha, acid	within coordinates
Rr246278	regulatory region 246278	538 bp distal
Rr403185	regulatory region 403185	1356 bp downstream
Tssr106170	transcription start site region 106170	1545 bp downstream
Tssr106171	transcription start site region 106171	1414 bp downstream
Tssr106172	transcription start site region 106172	652 bp upstream
Tssr106173	transcription start site region 106173	714 bp upstream