rs26999982 SNP Detail

Summary

• ID
  rs26999982
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119157288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAAGG AAGGAAGGAA
  GGTGAAAGCA GCAGCTGTTT CAGTAGTGCA CCTGTAAGCT CTGGCTGGGC TTGTTTTAGA
  GTTTTCTGAT CGTCTGACAG CCCTAGGGAA CTAGGCTCAG CCGCCTGTCT CCAGTACCAA
  TTAAAGAGAC AACAGTGAAC AGCAGAGAAA GGGGGTTTAG TTGGTGTGGC CACTTTGGGA
  S
  GTAAAACAGA TGGGAATGGA ACAAATTGGG GGCGGGGGTG TGTCCTGGTG TGAGCTCTAA
  CTCTGAATAG GGCAGAAGAG CTGTGTAGCC AAGCATGCTT GGTCACGGGA CGCTCCTGTC
  TGTTAGGAGA CCTCTGCAGA GCAGGGGTTT CCCTGTCGGA CCCCAGAATA GGCACAAGCC
  ACCAGGAACA AAGGTGAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37240505	NES08516794	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26999982					SNP	G	G	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37240505	NES08516794	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119157288 () rs orientation: forward

Symbol	Name	Function Class
Ccdc40	coiled-coil domain containing 40	1224 bp downstream
Cpgi4265	CpG island 4265	1192 bp proximal
Gaa	glucosidase, alpha, acid	1501 bp upstream
Rr232403	regulatory region 232403	288 bp distal
Rr239320	regulatory region 239320	1488 bp distal
Rr239321	regulatory region 239321	1088 bp distal
Rr246278	regulatory region 246278	1112 bp proximal
Rr403185	regulatory region 403185	1394 bp upstream
Tssr106170	transcription start site region 106170	1495 bp upstream
Tssr106171	transcription start site region 106171	1542 bp upstream