rs26999984 SNP Detail

Summary

• ID
  rs26999984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119156789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCACAAAC ACACACACAC ACACACACAC ACACACACAC
  CCTGCTCCAA CACAAGAGCT CCACTCACCC GCCTACCCCG CCCTGGACAC ACCCACCGAA
  R
  CGTGGCCTTC TCCAGTACTT GCTGTTTAGA AATGAAAGCT AGCCTGGAGA GATGGCTCAG
  TGGTTAAGGG CACTGATTGC TCTTCCAGGT TCCCTGAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37240507	NES08516808	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G		A	A	G	A	A
ss132903745	ENSMUSSNP3901513	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs26999984					SNP	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37240507	NES08516808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119156789 () rs orientation: forward

Symbol	Name	Function Class
Ccdc40	coiled-coil domain containing 40	725 bp downstream
Cpgi4265	CpG island 4265	1691 bp proximal
Gaa	glucosidase, alpha, acid	2000 bp upstream
Rr232403	regulatory region 232403	12 bp proximal
Rr239320	regulatory region 239320	989 bp distal
Rr239321	regulatory region 239321	589 bp distal
Rr246278	regulatory region 246278	1611 bp proximal
Rr403185	regulatory region 403185	1893 bp upstream
Tssr106170	transcription start site region 106170	1994 bp upstream