rs27000311 SNP Detail

Summary

• ID
  rs27000311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115081106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TGCAGTGTGC TTTGGACATG
  Y
  TGACCTCTTC TCCCGGGACC TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37248530	NES08521382	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C	C	T		T	T	T		T
ss323861653	CHEV_11_115051594	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27000311					SNP	T	C	T	C	C	C	C	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248530	NES08521382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115081106 () rs orientation: forward

Symbol	Name	Function Class
Rr459797	regulatory region 459797	1670 bp distal
Rr459798	regulatory region 459798	1246 bp distal
Rr459799	regulatory region 459799	654 bp distal
Rr459800	regulatory region 459800	1806 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	1600 bp upstream
Tssr3730	transcription start site region 3730	653 bp downstream
Tssr111736	transcription start site region 111736	1506 bp upstream