rs27000313 SNP Detail

Summary

• ID
  rs27000313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCATGTG ATAGTTCTTA
  GAATCCCCTG TCAGCAAGAA GATGTCTGCA CTGTCCCTAC ACGTTGCCAC AGTTCCTGCT
  TTTTCTGACA CTCACTACAG ACTTGGAGAC GAGGAAGTGA GTTATTGCTG TGACTGTGTT
  TTAGAAAGAA AGTACCTTAT GTCCCCATTC CTTGTGCCTT CACCATGTAA TCATCCACTC
  R
  GGCCACCTTG TGATGCCACA GCCGCCTGGA CAGTTAGGCC TGTGTGCCTC AGGAGCTCCG
  CTTCACACAC CTCCCCCTTT TCTCCTTCCC ATCTTCTGTG TGCTTTATCT GGGGTCTTTG
  CACTTTGCCA TAAACAAGCA CTGTGATTTT GTTTTTATCT TAATTGTGAA GGAAGAGAGA
  TGAGAAAGAT GGGTGCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248532	NES08521399	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000313					SNP	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248532	NES08521399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1645 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1756 bp upstream
Rr459795	regulatory region 459795	1779 bp distal
Rr459796	regulatory region 459796	1337 bp distal
Rr459797	regulatory region 459797	1002 bp distal
Rr459798	regulatory region 459798	578 bp distal
Rr459799	regulatory region 459799	within coordinates
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	932 bp upstream
Tssr3730	transcription start site region 3730	within coordinates
Tssr111734	transcription start site region 111734	1776 bp upstream
Tssr111735	transcription start site region 111735	1744 bp upstream
Tssr111736	transcription start site region 111736	838 bp upstream