rs27000315 SNP Detail

Summary

• ID
  rs27000315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG AAAGTGCTGG AGTGGATGGT
  K
  ACCCTGTCCA TGCAATCATG TGATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37248534	NES08521397	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	T	G	T	T	G			G	G	G		G
ss132872480	ENSMUSSNP469730	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					T				G
ss323861644	CHEV_11_115050713	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27000315					SNP	G	G	T	G	T	T	G	T	T	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248534	NES08521397	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1432 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1543 bp upstream
Rr403112	regulatory region 403112	1896 bp downstream
Rr459794	regulatory region 459794	1902 bp distal
Rr459795	regulatory region 459795	1566 bp distal
Rr459796	regulatory region 459796	1124 bp distal
Rr459797	regulatory region 459797	789 bp distal
Rr459798	regulatory region 459798	365 bp distal
Rr459799	regulatory region 459799	within coordinates
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	1828 bp downstream
Tssr3729	transcription start site region 3729	719 bp upstream
Tssr3730	transcription start site region 3730	178 bp upstream
Tssr105849	transcription start site region 105849	1837 bp downstream
Tssr111734	transcription start site region 111734	1563 bp upstream
Tssr111735	transcription start site region 111735	1531 bp upstream
Tssr111736	transcription start site region 111736	625 bp upstream