rs27000316 SNP Detail

Summary

• ID
  rs27000316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115079790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG GTCTTGGATG TTGAAAGAGG
  Y
  GGTGAACTGC AGAGTCTCCC AATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37248535	NES08521396	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T		C	T	T	C		C	C	C		C
ss38815129	mCV22628635	ABI	CRAMUS_MOUSE	f	SNP		C	T				T		T
ss323861642	CHEV_11_115050278	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27000316					SNP	C	C	T	C	T	T	T	C	T	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248535	NES08521396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115079790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	997 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1108 bp upstream
Rr403112	regulatory region 403112	1461 bp downstream
Rr459794	regulatory region 459794	1467 bp distal
Rr459795	regulatory region 459795	1131 bp distal
Rr459796	regulatory region 459796	689 bp distal
Rr459797	regulatory region 459797	354 bp distal
Rr459798	regulatory region 459798	within coordinates
Rr459799	regulatory region 459799	369 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	1393 bp downstream
Tssr3729	transcription start site region 3729	284 bp upstream
Tssr3730	transcription start site region 3730	613 bp upstream
Tssr105849	transcription start site region 105849	1402 bp downstream
Tssr111731	transcription start site region 111731	1680 bp upstream
Tssr111732	transcription start site region 111732	1646 bp upstream
Tssr111733	transcription start site region 111733	1605 bp upstream
Tssr111734	transcription start site region 111734	1128 bp upstream
Tssr111735	transcription start site region 111735	1096 bp upstream
Tssr111736	transcription start site region 111736	190 bp upstream