rs27000318 SNP Detail

Summary

• ID
  rs27000318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115079085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGTCTCA TCTCTGCAGT TAGAGAACTA AAGTCTACTC
  TTTTGTCTTA GGAGCTGCGG CTGCTGCTGC CACTGCATAG AAGTAACCTC TTGGGCCAGC
  Y
  CTTCCTCACT CTCTGGAGAT GGCAGGCGAG ATCACAGAGA CCGGAGAGCT CTATTCTCCT
  TATGTGAGTT CTTCTCCATA AATGTGTTCT GCTCACCACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37248537	NES08521435	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27000318					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248537	NES08521435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115079085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	292 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	403 bp upstream
Rr403112	regulatory region 403112	756 bp downstream
Rr459794	regulatory region 459794	762 bp distal
Rr459795	regulatory region 459795	426 bp distal
Rr459796	regulatory region 459796	within coordinates
Rr459797	regulatory region 459797	330 bp proximal
Rr459798	regulatory region 459798	460 bp proximal
Rr459799	regulatory region 459799	1074 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	688 bp downstream
Tssr3729	transcription start site region 3729	396 bp downstream
Tssr3730	transcription start site region 3730	1318 bp upstream
Tssr105849	transcription start site region 105849	697 bp downstream
Tssr111731	transcription start site region 111731	975 bp upstream
Tssr111732	transcription start site region 111732	941 bp upstream
Tssr111733	transcription start site region 111733	900 bp upstream
Tssr111734	transcription start site region 111734	423 bp upstream
Tssr111735	transcription start site region 111735	391 bp upstream
Tssr111736	transcription start site region 111736	505 bp downstream