rs27000320 SNP Detail

Summary

• ID
  rs27000320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115078153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC CAACGACAGG CGTCAGCGTC
  Y
  GTCCCGGAGA AACAGGCTTT CCGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248539	NES08521433	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T		T	T	T	C	C	C	T	C
ss38707157	mCV22628623	ABI	CRAMUS_MOUSE	f	SNP		C	T				T
ss132872464	ENSMUSSNP1845265	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000320					SNP	C	C	T	C	T	T	T	T	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248539	NES08521433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115078153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	within coordinates
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	within coordinates
Rr403112	regulatory region 403112	within coordinates
Rr459794	regulatory region 459794	within coordinates
Rr459795	regulatory region 459795	171 bp proximal
Rr459796	regulatory region 459796	507 bp proximal
Rr459797	regulatory region 459797	1262 bp proximal
Rr459798	regulatory region 459798	1392 bp proximal
Tmem104	transmembrane protein 104	160 bp upstream
Tssr3728	transcription start site region 3728	241 bp upstream
Tssr3729	transcription start site region 3729	1328 bp downstream
Tssr105849	transcription start site region 105849	154 bp upstream
Tssr111731	transcription start site region 111731	43 bp upstream
Tssr111732	transcription start site region 111732	9 bp upstream
Tssr111733	transcription start site region 111733	within coordinates
Tssr111734	transcription start site region 111734	500 bp downstream
Tssr111735	transcription start site region 111735	532 bp downstream
Tssr111736	transcription start site region 111736	1437 bp downstream