rs27000338 SNP Detail

Summary

• ID
  rs27000338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115072460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAGGGTGT AGATTTTCAG TGATCTGAGC CTGCCCCAGA
  CACCTGTGTC TCCCAATGGC CTGACTGATC CAGCACAGAA GAGTAGACCA CTTAGCCTCC
  R
  GACACATTGT GTGGCAAGGT GGGATAGGAG GGACTTTGCA AAGGGAAATA GACTGCCTCT
  CTGTCAAGAG GCTTTTGAGG GCCCAGGCTG CAGGGCCAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248559	NES08521594	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000338					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248559	NES08521594	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115072460 () rs orientation: forward

Symbol	Name	Function Class
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1195 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	453 bp downstream
Rr459792	regulatory region 459792	196 bp proximal
Rr459793	regulatory region 459793	856 bp proximal
Tssr105846	transcription start site region 105846	1594 bp downstream
Tssr105847	transcription start site region 105847	1314 bp downstream
Tssr105848	transcription start site region 105848	675 bp downstream