rs27000342 SNP Detail

Summary

• ID
  rs27000342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115072038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT GTCCTCCTTT GTCTCTTTGC
  Y
  TTCCAGCCTC GCACGCGGCG GGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37248563	NES08521590	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	T		C	T	T	C		C	C	C	C		C
ss38818507	mCV22628366	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss132872305	ENSMUSSNP5578092	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
ss323861591	CHEV_11_115042526	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27000342					SNP	C	C	T	T	C	T	T	T	C	T	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248563	NES08521590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115072038 () rs orientation: forward

Symbol	Name	Function Class
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1617 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	31 bp downstream
Tssr105846	transcription start site region 105846	1172 bp downstream
Tssr105847	transcription start site region 105847	892 bp downstream
Tssr105848	transcription start site region 105848	253 bp downstream