rs27000343 SNP Detail

Summary

• ID
  rs27000343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115071985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTCTACT CTCACCCTGA GAGACCTGGG CAGCCAGGCT
  TTCCCCAGGC TGCCCGCCCT GAGCCAGGTG CCACCACTGT AAGGAAATGC CTTCAGAAAT
  Y
  CACTGGTTCC TTCAAAGCGC TCAAGCCTCT GTGTCCTCCT TTGTCTCTTT GCTTTCCAGC
  CTCGCACGCG GCGGGTAGTG TGGGTAATGA CTTCCCAGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248564	NES08521589	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000343					SNP	T	T	T	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248564	NES08521589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115071985 () rs orientation: forward

Symbol	Name	Function Class
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1670 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459791	regulatory region 459791	1552 bp distal
Rr459792	regulatory region 459792	671 bp proximal
Rr459793	regulatory region 459793	1331 bp proximal
Tssr105846	transcription start site region 105846	1119 bp downstream
Tssr105847	transcription start site region 105847	839 bp downstream
Tssr105848	transcription start site region 105848	200 bp downstream