rs27000344 SNP Detail

Summary

• ID
  rs27000344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115071862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG TCGTTGTACC CAGGGCATGG
  Y
  AATGGCCTCA TCCTTAAAAT GTTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248565	NES08521588	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	C	C	C	C	C	C	C	C
ss38724728	mCV22628365	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss132872301	ENSMUSSNP7168803	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000344					SNP	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248565	NES08521588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115071862 () rs orientation: forward

Symbol	Name	Function Class
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1793 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Tssr105846	transcription start site region 105846	996 bp downstream
Tssr105847	transcription start site region 105847	716 bp downstream
Tssr105848	transcription start site region 105848	77 bp downstream