rs27000346 SNP Detail

Summary

• ID
  rs27000346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115071074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGCCA GCCCTGGCAA
  GATCTGCCTC CAGCGATACC AGTGAGGAGG TAGGCTGGCC CCATGGGGGT TGGTTACGGG
  AAGCCATTTC CAGGATACTC TGGTTCCTGG CACACTAGCC TGCCCTTGAG GTCATGTGCT
  GAGGTGCAGT TTGTTCTTGT GACCTGACTA CCCTGGCCAT TGCTCCAAGG GATCTAATCC
  R
  CTTCTCTGAT GCCAAGGACT GGGGATCCCT CGGGTGGACA ATTTGACTCC TTCCTCTTCT
  TTACAGCTAA ATTCCCAAGA CAGCCCCAAG AGACAAGTTT CCACAGAGCC CTCATCTACC
  TCCTCCTCCT CCTCTGACCC CATCTTGGAC CTCAACATCT CCTTGGCTGT GGCTAAAGAG
  AGGGCCCACC AGAAGCGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248569	NES08521582	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000346					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248569	NES08521582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115071074 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459790	regulatory region 459790	1783 bp distal
Rr459791	regulatory region 459791	641 bp distal
Rr459792	regulatory region 459792	1582 bp proximal
Tssr105846	transcription start site region 105846	208 bp downstream
Tssr105847	transcription start site region 105847	61 bp upstream
Tssr105848	transcription start site region 105848	707 bp upstream