rs27000349 SNP Detail

Summary

• ID
  rs27000349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115070038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTCTGA GCTGACCTTT
  GCTCTCTCCC TCATCTAGGC CCCTTGCCTG AGCCCTTCAG CAATGGAGAG ATACAGAAGG
  TAAGGGGTCC CCTAACCCAC TACCCCCACA TCTCTGTAGG GACAGGGCAA GTGGTGGCAC
  AGATGAGAGA CTGGCTTAGG CTCACACATC GGGGACCAGT TCCAAATTCT TCCTGAGTTT
  Y
  GAGCCTTAGG CCTGCCAGAG TACCCCAGCC CCTGTCAGGG GGCAAAGCTG TCACTTGGGA
  AAGGCTAGCC TGGGGCCCCT CTGCAGCCCC CGCCTCCAAC TCCCACCATA CAGAAGAGGC
  CATTCTTTCC CCTAAGAACA GAACCTCAGT GTCTGGCTGC TGGTCCTACT ACTTCCAACC
  CCTCCTCCTC GGGCAGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248572	NES08521579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000349					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248572	NES08521579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115070038 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Tssr105846	transcription start site region 105846	815 bp upstream
Tssr105847	transcription start site region 105847	1097 bp upstream
Tssr105848	transcription start site region 105848	1743 bp upstream