rs27000354 SNP Detail

Summary

• ID
  rs27000354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115069203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGCCTG GCTTTCTTTA
  CCACTGGCCT CTCCTAACTC CATCCACGAC ACTGTCCTTG AACCTTCTTG TCCCCTCATT
  TCCAGGTGGC AGATAGTTGG CATTGTTCTC TCTCCAGGGC AGCAGGTGCC AACTATATAA
  TCTGAGGTGT GGCCCCAAAT CCGCTGTCAT AGCAGCAACC CTTGGGATAT GTGAATACCT
  R
  GGCCCAGCTG TATACGTGGG AGATCAGAGG ACAGCTTTAC AGGCCTCGGT TCTCCCCATC
  TGCCATCTGA GTCTCGGGGA TCCAACTCGG GTCATCGGGC TTGGTGGCAA GTATCTACCC
  ACCCATCTCT CTGGCCATAG GGGCACCTGG TTTTGACTGG CCACCCTAGA ACCCCATCCC
  ATCTTAACTC TCTAGCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248577	NES08521651	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000354					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248577	NES08521651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115069203 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459790	regulatory region 459790	within coordinates
Rr459791	regulatory region 459791	714 bp proximal
Tssr105846	transcription start site region 105846	1650 bp upstream
Tssr105847	transcription start site region 105847	1932 bp upstream