rs27000355 SNP Detail

Summary

• ID
  rs27000355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115069039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACATTAC TCAGTTCCCC
  AAGGGGAGGG GTAGCGTGGC CAGTCCTGTC AAGGGGAAAG ATTCACATGC CATATAACCA
  AAGTATACAG AAGCACCCTG CCCATCCTTC CTAGTCTCTG AGCGTGGAGC ACTGCCTGCC
  TTCACAGGCC GAACGGGAGG CAACTCCAGG CCTGGCTTTC TTTACCACTG GCCTCTCCTA
  R
  CTCCATCCAC GACACTGTCC TTGAACCTTC TTGTCCCCTC ATTTCCAGGT GGCAGATAGT
  TGGCATTGTT CTCTCTCCAG GGCAGCAGGT GCCAACTATA TAATCTGAGG TGTGGCCCCA
  AATCCGCTGT CATAGCAGCA ACCCTTGGGA TATGTGAATA CCTAGGCCCA GCTGTATACG
  TGGGAGATCA GAGGACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248578	NES08521650	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000355					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248578	NES08521650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115069039 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459790	regulatory region 459790	within coordinates
Rr459791	regulatory region 459791	878 bp proximal
Tssr105846	transcription start site region 105846	1814 bp upstream