rs27000395 SNP Detail

Summary

• ID
  rs27000395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115056872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG TTCAGCCTGT ATTTGTTTGC
  R
  GAGTGGGAAC TGCTCTGTTA ATCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248618	NES08522004	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G	G	G	A	G	A	A	G	G
ss38707452	mCV22627816	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G		G
ss132871994	ENSMUSSNP5812913	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000395					SNP	A	A	G	G	A	G	G	G	G	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248618	NES08522004	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115056872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1717 bp distal
Cpgi4110	CpG island 4110	912 bp distal
Gm72084	predicted gene, 72084	1724 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459784	regulatory region 459784	1234 bp distal
Rr459785	regulatory region 459785	1456 bp distal
Rr459786	regulatory region 459786	815 bp proximal