rs27000396 SNP Detail

Summary

• ID
  rs27000396
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115056646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGA AACAATAAGG AGCACTTGTG
  S
  CCCGTTAGTT CACTGTTGCC CATGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248619	NES08522003	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	G	G	G	G	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27000396					SNP	C	G	G	C	G	G	G	G	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248619	NES08522003	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115056646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1491 bp distal
Cpgi4110	CpG island 4110	686 bp distal
Gm72084	predicted gene, 72084	1498 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	Intron
Rr459784	regulatory region 459784	1008 bp distal
Rr459785	regulatory region 459785	1230 bp distal
Rr459786	regulatory region 459786	1041 bp proximal