rs27000397 SNP Detail

Summary

• ID
  rs27000397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115055636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG CCCTGGTGTC TCCTCTTCTC
  K
  GTCCAGCGAT TGTAAGCCGG CTGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37248620	NES08522002	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27000397					SNP	T	G	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248620	NES08522002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115055636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	481 bp distal
Cpgi4110	CpG island 4110	within coordinates
Gm72084	predicted gene, 72084	488 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr369433	regulatory region 369433	1780 bp downstream
Rr403111	regulatory region 403111	1447 bp downstream
Rr459783	regulatory region 459783	1459 bp distal
Rr459784	regulatory region 459784	within coordinates
Rr459785	regulatory region 459785	220 bp distal
Tssr3727	transcription start site region 3727	1439 bp downstream
Tssr105840	transcription start site region 105840	1462 bp downstream
Tssr105841	transcription start site region 105841	1427 bp downstream
Tssr105842	transcription start site region 105842	1397 bp downstream
Tssr105843	transcription start site region 105843	1391 bp downstream
Tssr105844	transcription start site region 105844	1361 bp downstream
Tssr111730	transcription start site region 111730	1675 bp upstream