rs27001374 SNP Detail

Summary

• ID
  rs27001374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115904084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT CATCTCATCC AGTGGCCGGC
  W
  GGAAGCAAGC TCAGGCACTC CTCGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37247393	NES08520817	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	T		T	A	A	A	A	A	T
ss38776022	mCV24180292	ABI	CRAMUS_MOUSE	f	SNP		T					A		A
ss132881736	ENSMUSSNP5691142	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27001374					SNP	A	T	A	A	A	T	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37247393	NES08520817	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115904084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4157	CpG island 4157	189 bp distal
Galk1	galactokinase 1	539 bp upstream
Gm73084	predicted gene, 73084	within coordinates
Rr369447	regulatory region 369447	863 bp downstream
Rr460121	regulatory region 460121	1460 bp distal
Rr460122	regulatory region 460122	49 bp distal
Rr460123	regulatory region 460123	1490 bp proximal
Tssr111809	transcription start site region 111809	547 bp upstream
Tssr111810	transcription start site region 111810	534 bp upstream