rs27001375 SNP Detail

Summary

• ID
  rs27001375
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115904003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTGGAG CCTCTTAATG
  CGCTCCCATC CCCATCATCA TCATCCCTCA CACAGCCAGG GCAACACCAA CACGAGCTGG
  CAACAGGAAC AGCTGAGTGT CCCAGAGGAT CTAGCGAAGT TATGCTAAGT CGTCAGCCCC
  TGGTCGGTCA TGTCTCTAAC AGGATGATGT GGTACACAGT CTAGGGATAA ACAAGGAGAG
  M
  CAAGGTTCGA AGCCTTTTAC AGGCTCCTTC TCTGGCTCCT GGCGATGGAG GACTGAAGTT
  CATCTCATCC AGTGGCCGGC AGGAAGCAAG CTCAGGCACT CCTCGATGAC GCAAAGGCTA
  CTGCAAAGAT GGCTAATGTT GTTGGCCCCT AGCAGTTGCT TCCTCCACAA GAGCCTTGGT
  CTCAGAGACA TGACCATCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37247394	NES08520816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27001375					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37247394	NES08520816	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115904003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4157	CpG island 4157	108 bp distal
Galk1	galactokinase 1	458 bp upstream
Gm73084	predicted gene, 73084	within coordinates
Rr369447	regulatory region 369447	782 bp downstream
Rr460121	regulatory region 460121	1379 bp distal
Rr460122	regulatory region 460122	within coordinates
Rr460123	regulatory region 460123	1571 bp proximal
Tssr111809	transcription start site region 111809	466 bp upstream
Tssr111810	transcription start site region 111810	453 bp upstream