rs27001377 SNP Detail

Summary

• ID
  rs27001377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115903200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTGGAC TATTAGGAAT
  GCGCCACCAT GCCTAATACT CTCTTATATT GCTTCCTTGG TCCTCACATT TTTAAGAGGT
  TCATACTTCC AAGTTGTGGG CGATGCCCCC AGAAGGCGGG CTCGAGAAGA CAAACCGCAC
  AGCCCCCCTC CCCCCAGCTC TGGCTTCCTG TCTTCGCACG TGGACAACTG CACGTCCCGG
  R
  GTCTCTCACG TCTGCTAGAC CGCTTCACTC CGCCTTCCAC CCGGAGGGTA CCCGCCCTCC
  CGTGCCCCCT ATGCCAGCCC TTCCCTACCG CAGGCCGGGC CAGCACACAC AAGGAAGGGT
  CCCCAATGCG GCCCCTCACC ATGGGCAGCA CCAGGCCCTG GTTGTAGTCC GTGTGCTCCC
  CGATGAGGTT GACGCGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37247396	NES08520812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27001377					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37247396	NES08520812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115903200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4157	CpG island 4157	within coordinates
Galk1	galactokinase 1	within coordinates
Gm73084	predicted gene, 73084	within coordinates
Rr369447	regulatory region 369447	within coordinates
Rr460121	regulatory region 460121	576 bp distal
Rr460122	regulatory region 460122	335 bp proximal
Tssr111809	transcription start site region 111809	304 bp downstream
Tssr111810	transcription start site region 111810	339 bp downstream