rs27001379 SNP Detail

Summary

• ID
  rs27001379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115901560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGGAA AGCGGCGGCT
  AAGTGGTACC TGGGCAGAGC TGCTGGATGA AGGTGTACGT GGCCACTTCC AGAGACGCTG
  AGCTGGAAAG CCCACCCCCC AGGGGCACTG AGCTGACCAC CACTGCACTG AAGCCAACGA
  GCGGGGAAGC TGCGGGGGGG CGGGGGGAAG AAGGATGCTG ATAAAGATGG GAGCGTGGAC
  R
  TAGGAAAAAC GCGTGCCTTA CCAGCCTGCT CCACTCAGGG AGCCACCCAC TCTGCTGCCC
  TCTGAGTGTG CTGGCTTAAT CTTCCTACTA GCCTTCCCGA TTTAGGGTGG CAGAGGCCAG
  CAAGCTAACA ATTGAATTCG GGCTCCTCTA ATCATACAAA GGAAACCTAG GGCAAGTTCC
  AAGCCTCCAG AACCTCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37247398	NES08520937	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27001379					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37247398	NES08520937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115901560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4157	CpG island 4157	1511 bp proximal
Galk1	galactokinase 1	within coordinates
Gm73084	predicted gene, 73084	1054 bp upstream
Rr369447	regulatory region 369447	1474 bp upstream
Rr460121	regulatory region 460121	730 bp proximal
Rr460122	regulatory region 460122	1975 bp proximal
Tssr111809	transcription start site region 111809	1944 bp downstream
Tssr111810	transcription start site region 111810	1979 bp downstream