rs27002273 SNP Detail

Summary

• ID
  rs27002273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116426588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGAGAAC GCAAGAGGGC
  TCCTGTCCCA TCTGATCTTT AACCTTGCAG GTACGAGCAG GTGACTAATG AAGACCTGCT
  CATCAACTGC ACACTGCTGT TGTGCCGCCG GCGCCTGTCA CCCATGAACC TGCTGTCCCT
  GCACACTGCT TCTGGGCTGC GGCTCTATTC TGTGCTCAGT CTGTCCTGGG GCTTTGTTGC
  Y
  GACGTGGACC TCGAGAGTGA GAAGTACAGG CGCTTGGGGG AGATTCGTTT CACAGTGGGC
  ACCTTCTTTC GCCTAGCAAG CCTGCGCATC TACCAAGGCC AACTGGCCTA CCTTCCTGTA
  GGAACTGTGG CCTCTAAGAG ACCCGCCTCT ACACTGGTGC AGAAGGGCCC CGTCGACACA
  CACCTTGTTC CTCTGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37246396	NES08516641	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27002273					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246396	NES08516641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116426588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	1318 bp distal
Rr460332	regulatory region 460332	1012 bp distal
Rr460333	regulatory region 460333	1067 bp distal
Rr460334	regulatory region 460334	511 bp proximal
Sphk1	sphingosine kinase 1	within coordinates
Tssr3739	transcription start site region 3739	1758 bp upstream
Tssr105970	transcription start site region 105970	1790 bp downstream
Tssr105971	transcription start site region 105971	1708 bp downstream
Tssr105972	transcription start site region 105972	1693 bp downstream
Ube2o	ubiquitin-conjugating enzyme E2O	1978 bp downstream