rs27002274 SNP Detail

Summary

• ID
  rs27002274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116426089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACTCTT CCACCAGAAC
  GGAAGAACCA TGCCAGGGAG CTGGTGTGTG CAGAGGAGTT GGGTCACTGG GACGCCCTGG
  CAGTCATGTC CGGTGATGGT CTGATGCATG AGGTAAGGGA TGGGCTAGAG GATGGCCCAG
  AGGGCTTGGG ATGGTTTTCC TAGACTGAGA CACTCTGCCT ATTTAACAGG TGGTGAATGG
  R
  CTAATGGAAC GGCCAGACTG GGAGACTGCC ATCCAGAAAC CCCTGTGTAG CCTCCCTGGA
  GGCTCCGGCA ATGCGCTGGC AGCTTCTGTG AACCACTATG CTGGGTGAGA GCTGAGGGTC
  AGAGTGGGCA TCATGTCCCC TACCGCCATT TTCTGAGTTC CTGTGGGAAG CTCCACTTTC
  TGCTGGAGTC TTGTCCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37246397	NES08516640	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27002274					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246397	NES08516640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116426089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	819 bp distal
Sphk1	sphingosine kinase 1	within coordinates
Tssr3739	transcription start site region 3739	1259 bp upstream
Tssr105968	transcription start site region 105968	1988 bp downstream
Tssr105969	transcription start site region 105969	1960 bp downstream
Tssr105970	transcription start site region 105970	1291 bp downstream
Tssr105971	transcription start site region 105971	1209 bp downstream
Tssr105972	transcription start site region 105972	1194 bp downstream
Tssr111938	transcription start site region 111938	1554 bp upstream