rs27002276 SNP Detail

Summary

• ID
  rs27002276
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116425679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGTATT TGGCGCCCTT
  GAAGGCCAGA AGAGGGCGTA GAGATCCTCA GGAACTGGAC CTGGGAGTTC GGGACCACTG
  TGAGCCACCT TTCTGGTGCT GGAACTGAAC CTGGGTCTTG TAGAAGAGCA GCAAGTGCTC
  TTACCTACCA AGCTCTCTCT CCAGCCCCAT GTGGTGGTGT TGTGTTTTGT TTGTAGTAGA
  M
  TGCCCTCGAG GACTGCTCCC ACGGCCATGC AGAGTGCTGG TGCTGCTGAA CCCCCAGGGT
  GGCAAGGGCA AGGCTCTGCA GCTCTTCCAG AGCCGTGTGC AGCCCTTCCT GGAGGAGGCA
  GAGATAACCT TTAAACTGAT ACTCACCGGT GAGTGCTGAC CCCAGAGGGT GAAGGGAGCA
  TTTCATGCCA GAAAACCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37246399	NES08516638	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27002276					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246399	NES08516638	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116425679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	409 bp distal
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	1776 bp upstream
Tssr3739	transcription start site region 3739	849 bp upstream
Tssr105968	transcription start site region 105968	1578 bp downstream
Tssr105969	transcription start site region 105969	1550 bp downstream
Tssr105970	transcription start site region 105970	881 bp downstream
Tssr105971	transcription start site region 105971	799 bp downstream
Tssr105972	transcription start site region 105972	784 bp downstream
Tssr111937	transcription start site region 111937	1730 bp upstream
Tssr111938	transcription start site region 111938	1144 bp upstream