rs27002278 SNP Detail

Summary

• ID
  rs27002278
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116423725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGCGGAG GAGCAGGGGA
  GGAAGAGAAG TTCGCGGGTG GCGGGTGACC CGACCCTGGC CCAGAGTCAG GACAGCACTA
  GGGTCTGGAT GTGGAATTCA GGCTAGGTCT AAGCGACGCC AAAGAGGCGC TGCATCCCTA
  CTGTGAACAG CAGTTTCGAG GTTCAGTAAG CGCAGACCCA CGCGTACCCG AAGCCCGCTC
  S
  GATGCTGGGC GCCGGCATGT GGGCTGCGCC CTCGCTTTCG CGCTCCGCGG ATGCGCTGCT
  TCAGGCCGGG CTCAGAACCC CACCTCTTGC GGACTTCCTA AGCTGTTCCT CCAGCACCGG
  GCGCACAATC GTATCCGGGG ATCCTGCCCC TCATCTGCGC GTGGCCGAGC CCAGGCTGGC
  GGCGACTGTG TTCGGGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37246401	NES08516768	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27002278					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246401	NES08516768	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116423725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	within coordinates
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	within coordinates
Tssr3738	transcription start site region 3738	398 bp downstream
Tssr3739	transcription start site region 3739	1073 bp downstream
Tssr105960	transcription start site region 105960	1796 bp downstream
Tssr105961	transcription start site region 105961	1057 bp downstream
Tssr105962	transcription start site region 105962	1025 bp downstream
Tssr105963	transcription start site region 105963	1003 bp downstream
Tssr105964	transcription start site region 105964	885 bp downstream
Tssr105965	transcription start site region 105965	474 bp downstream
Tssr105966	transcription start site region 105966	421 bp downstream
Tssr105967	transcription start site region 105967	338 bp downstream
Tssr105968	transcription start site region 105968	358 bp upstream
Tssr105969	transcription start site region 105969	386 bp upstream
Tssr105970	transcription start site region 105970	1063 bp upstream
Tssr105971	transcription start site region 105971	1138 bp upstream
Tssr105972	transcription start site region 105972	1159 bp upstream
Tssr111937	transcription start site region 111937	170 bp downstream
Tssr111938	transcription start site region 111938	796 bp downstream