rs27002281 SNP Detail

Summary

• ID
  rs27002281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116422856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTGTC CCGCGGCTGT
  ACAGAGCCAA GGCATATATT GCAGTGACGC GTGCGGAACC GCAGGTCCAG CCTGTGCCCC
  TGGCCCTCCT GGGGACTCCT AAAATACTGA GAAACTCGGT CGGGGAACTC CAGGGTCCTC
  TGGGAGAGAA GCCACCTTCA AGGCGTGACC TAGTTCACTG CAATCCTTTC TTATCTGGGT
  Y
  CGTTTTCCTC TTGGACTCGC CTCTTCTGGA CTTTAAGAAG CGATGCGAAG ATAGAGGTGG
  GTGGGGTCGC GCGGGGGCCG GTGTGGGCGC GCCAGTTCTC TGTAACCGGA GCTAAACCAA
  TGCAGCTTCC TTGGGAGTTT GGTGTCTGTT TTTGGTGCTT GGTAGGATTT GGGAGCTTCT
  TTTTCCAAGT CTCCGCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37246404	NES08516765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27002281					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246404	NES08516765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116422856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	within coordinates
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	within coordinates
Tssr3738	transcription start site region 3738	468 bp upstream
Tssr3739	transcription start site region 3739	1942 bp downstream
Tssr105960	transcription start site region 105960	927 bp downstream
Tssr105961	transcription start site region 105961	188 bp downstream
Tssr105962	transcription start site region 105962	156 bp downstream
Tssr105963	transcription start site region 105963	134 bp downstream
Tssr105964	transcription start site region 105964	16 bp downstream
Tssr105965	transcription start site region 105965	392 bp upstream
Tssr105966	transcription start site region 105966	411 bp upstream
Tssr105967	transcription start site region 105967	520 bp upstream
Tssr105968	transcription start site region 105968	1227 bp upstream
Tssr105969	transcription start site region 105969	1255 bp upstream
Tssr105970	transcription start site region 105970	1932 bp upstream
Tssr111937	transcription start site region 111937	1039 bp downstream
Tssr111938	transcription start site region 111938	1665 bp downstream