rs27002440 SNP Detail

Summary

• ID
  rs27002440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116331185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGAAGC TGGTGTGGGG
  GTTGCCCCAT CTCGCCCTCT GCACACCTCA ATCCAGAGGT GGGAATAATA GCAACTGCTT
  TATTTTGAGA CCGGTTCTTG CTGCGTAGCC CAGGCTGGCC TTGAGTAGTG TGATTACGGT
  TTCTTGGACC CCCCCCCCCC AAGTTGGGTC AGGCTCTCTT GTGGACCACT AAGATCTGCC
  Y
  GGAGGCCCTA GATTAAGAGG TGACTAGGTA GCAGTGAGGG CTCTTCATCG GATCAGACCC
  TGAACCTGAA GACTCCTGAA TATCGAGTGA CCACAGGCAT GGAGCAAGCA TACTGGGCTG
  AGAGTCACCT TGGAAACAGA CCATACAGTC TGGACTGAGC CAGGCCTGAT CTCTATCTTG
  CCAGCCTAGC CAAGGCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37246565	NES08517884	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27002440					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246565	NES08517884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116331185 () rs orientation: forward

Symbol	Name	Function Class
Qrich2	glutamine rich 2	966 bp downstream
Rr460289	regulatory region 460289	within coordinates
Ubald2	UBA-like domain containing 2	1282 bp downstream