rs27002441 SNP Detail

Summary

• ID
  rs27002441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116330750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGACATAG GCACTGGGGC TGGGACAGGC CCTGACTCTG
  CCCTTGGGTC CAGAGGCGAG CTCAATAGTC TAGGGATGCC TACAGGGGTT TAGCCAGGCC
  R
  TCTTTTCCAT GCAGTCACAA GTGTGACCAC AGGAGACTTG AGAGGGACAG TAACTTTATT
  CTCCAGGGGC AGCCTCCACC CTGGGGCACC CCTGGCCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss37246566	NES08517923	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G		A	G		G
ss38771223	mCV24180999	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss132886591	ENSMUSSNP6668804	ENSEMBL	ENSEMBL_Sanger	f	SNP									G
ss323865676	CHEV_11_116301238	CHEVERUD	SCREENING_POP	f	SNP												G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs27002441					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37246566	NES08517923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116330750 () rs orientation: forward

Symbol	Name	Function Class
Qrich2	glutamine rich 2	1401 bp downstream
Rr460289	regulatory region 460289	within coordinates
Ubald2	UBA-like domain containing 2	847 bp downstream